STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf423Zinc finger protein 423. (1286 aa)    
Predicted Functional Partners:
hdac3
Histone deacetylase 3.
    
 0.654
ENSECRP00000011256
annotation not available
    
  0.603
ENSECRP00000000849
annotation not available
    
  0.527
znf219
Zinc finger protein 219.
    
 
0.495
znf536
Zinc finger protein 536.
    
 
0.495
rps13
Ribosomal protein S13.
    
 0.492
rbbp4
RB binding protein 4, chromatin remodeling factor.
    
  0.482
LOC114641485
Histone-binding protein RBBP7.
    
  0.482
LOC114652263
methyl-CpG-binding domain protein 2-like.
    
  0.463
mbd3
methyl-CpG binding domain protein 3.
    
  0.463
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.