STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114662386Transcription factor Sox-3. (306 aa)    
Predicted Functional Partners:
ENSECRP00000002222
annotation not available
    
 0.807
LOC114658153
POU domain, class 5, transcription factor 1-like.
    
 0.807
ctnnb1
Catenin beta 1.
    
 0.715
jup
Junction plakoglobin.
    
 0.647
sall4
Spalt like transcription factor 4.
   
 0.629
ube2i
Ubiquitin conjugating enzyme E2 I.
    
   0.626
lef1
Lymphoid enhancer binding factor 1.
    
 0.578
LOC114661956
SUMO-conjugating enzyme UBC9-like.
    
   0.576
tcf7l1
Transcription factor 7 like 1.
    
 0.559
tcf7l2
Transcription factor 7 like 2.
    
0.559
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.