STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcdc2bDoublecortin domain containing 2B. (392 aa)    
Predicted Functional Partners:
pot1
Protection of telomeres 1.
    
 0.794
stam
Signal transducing adaptor molecule.
    
 0.651
stam2
Signal transducing adaptor molecule 2.
    
 0.651
tert
Telomerase reverse transcriptase.
    
 0.624
eif3i
Eukaryotic translation initiation factor 3 subunit I.
 
      0.464
ENSECRP00000011985
annotation not available
    
   0.452
mc1r
Melanocortin 1 receptor.
    
   0.452
ENSECRP00000011256
annotation not available
    
   0.442
shtn1
Shootin 1.
    
 
 0.429
rasl11b
RAS like family 11 member B.
      
 0.412
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.