STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhbdd1Rhomboid domain containing 1. (214 aa)    
Predicted Functional Partners:
ENSECRP00000023395
annotation not available
 
     0.931
vcp
Valosin containing protein.
    
 
 0.833
LOC114667386
Transitional endoplasmic reticulum ATPase-like.
    
 
 0.833
lyrm4
LYR motif containing 4.
     
 0.786
mre11
MRE11 homolog, double strand break repair nuclease.
   
 
 0.762
LOC114665637
Heme-binding protein 1-like.
     
 0.755
spata5
Spermatogenesis associated 5.
    
 
 0.665
spata5l1
Spermatogenesis associated 5 like 1.
    
 
 0.665
piga
Phosphatidylinositol glycan anchor biosynthesis class A.
   
 
  0.641
pigw
Phosphatidylinositol glycan anchor biosynthesis class W.
   
 
  0.641
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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