STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prphPeripherin. (447 aa)    
Predicted Functional Partners:
ina
Internexin neuronal intermediate filament protein alpha.
  
 
 
0.716
nefl
Neurofilament light.
    
 
0.708
nefm
Neurofilament medium.
    
 
0.708
nefh
Neurofilament heavy.
    
 
0.708
ENSECRP00000018205
annotation not available
    
  0.573
LOC114649128
Low molecular weight neuronal intermediate filament-like.
  
 
 
0.499
ENSECRP00000004774
annotation not available
    
  0.479
LOC114648427
Uncharacterized LOC114648427.
    
  0.479
LOC114652601
Zona pellucida sperm-binding protein 4-like.
    
  0.479
fam107b
Family with sequence similarity 107 member B.
    
  0.479
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.