STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114664606Protein argonaute-1. (867 aa)    
Predicted Functional Partners:
dicer1
Dicer 1, ribonuclease III.
   
 0.964
tnrc6c
Trinucleotide repeat containing adaptor 6C.
    
 0.946
drosha
Drosha ribonuclease III.
    
 0.933
tarbp2
TARBP2 subunit of RISC loading complex.
    
 0.919
dhx9
DExH-box helicase 9.
   
 0.896
prkra
Protein activator of interferon induced protein kinase EIF2AK2.
    
 0.865
mrpl44
Mitochondrial ribosomal protein L44.
    
 0.865
snd1
Staphylococcal nuclease and tudor domain containing 1.
    
 0.858
ddx6
DEAD-box helicase 6.
   
 0.834
LOC114668158
Probable ATP-dependent RNA helicase ddx6.
   
 0.834
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.