STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114648807Tubulin alpha chain. (451 aa)    
Predicted Functional Partners:
ENSECRP00000011985
annotation not available
  
0.927
LOC114661378
WD repeat-containing protein 90-like.
   
  0.796
tubb1
Tubulin beta 1 class VI.
  
0.793
mc1r
Melanocortin 1 receptor.
 
 
 0.786
tubb4a
Tubulin beta 4A class IVa.
  
0.784
LOC114653606
Tubulin beta-2B chain.
  
0.783
LOC114653441
Tubulin beta-5 chain.
  
0.783
ENSECRP00000005302
annotation not available
  
0.782
tubb3
Tubulin beta 3 class III.
  
0.782
LOC114657077
Tubulin beta-4B chain.
  
0.780
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.