STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114654822E3 ubiquitin-protein ligase DTX3L-like. (441 aa)    
Predicted Functional Partners:
ENSECRP00000009796
annotation not available
   
 
 0.870
notch1
Notch receptor 1.
    
 0.869
LOC114658668
Neurogenic locus notch homolog protein 2-like.
    
 0.861
ENSECRP00000007679
annotation not available
    
 0.836
LOC114667713
Neurogenic locus notch homolog protein 2-like.
    
 0.836
LOC114662553
Protein FAM162A-like.
   
 
 0.791
LOC114655513
Protein mono-ADP-ribosyltransferase PARP14-like.
 
 
 
 0.757
LOC114655855
Probable E3 ubiquitin-protein ligase DTX2.
  
 
0.739
LOC114659737
E3 ubiquitin-protein ligase DTX4-like.
  
 
0.731
dtx1
Deltex E3 ubiquitin ligase 1.
  
 
0.716
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.