STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpv1Transient receptor potential cation channel subfamily V member 1. (779 aa)    
Predicted Functional Partners:
ENSECRP00000011043
annotation not available
     
 0.869
LOC114655300
Transient receptor potential cation channel subfamily M member 2-like.
     
 0.869
trpm6
Transient receptor potential cation channel subfamily M member 6.
   
 
 0.809
trpm7
Transient receptor potential cation channel subfamily M member 7.
   
 
 0.809
prkacb
Protein kinase cAMP-activated catalytic subunit beta.
    
 0.733
prkaca
Protein kinase cAMP-activated catalytic subunit alpha.
    
 0.733
prkca
Protein kinase C alpha.
    
 0.708
LOC114666861
Protein kinase C alpha type-like.
    
 0.708
prkch
Protein kinase C eta.
     
 0.684
prkce
Protein kinase C epsilon.
     
 0.684
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.