STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spcs1Signal peptidase complex subunit 1. (107 aa)    
Predicted Functional Partners:
spcs3
Signal peptidase complex subunit 3.
   
 0.998
sec11a
SEC11 homolog A, signal peptidase complex subunit.
   
 0.995
ENSECRP00000008174
annotation not available
   
 0.991
ENSECRP00000008202
annotation not available
   
 0.991
grp
Gastrin releasing peptide.
   
 0.983
ENSECRP00000002626
annotation not available
   
 0.894
ENSECRP00000002685
annotation not available
   
 0.894
immp1l
Inner mitochondrial membrane peptidase subunit 1.
   
 0.894
itfg2
Integrin alpha FG-GAP repeat containing 2.
   
 0.894
xrcc4
X-ray repair cross complementing 4.
   
 0.894
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.