STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erhERH mRNA splicing and mitosis factor. (113 aa)    
Predicted Functional Partners:
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 
 0.989
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
  0.987
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
  0.985
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
  0.985
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 
  0.984
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 
  0.983
wdr77
WD repeat domain 77.
    
 0.945
prmt5
Protein arginine methyltransferase 5.
    
 0.945
snrpb
Small nuclear ribonucleoprotein polypeptides B and B1.
   
  0.900
lsm10
LSM10, U7 small nuclear RNA associated.
   
 
 0.856
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.