STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcas2BCAS2 pre-mRNA processing factor. (225 aa)    
Predicted Functional Partners:
cwc15
CWC15 spliceosome associated protein homolog.
   
 0.999
cdc40
Cell division cycle 40.
   
 0.999
prpf8
pre-mRNA processing factor 8.
    
 0.999
prpf19
pre-mRNA processing factor 19.
   
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
plrg1
Pleiotropic regulator 1.
   
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 0.998
xab2
XPA binding protein 2.
    
 0.998
snrnp40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.998
aqr
Aquarius intron-binding spliceosomal factor.
    
 0.998
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.