STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114663558Tumor necrosis factor receptor superfamily member 16-like. (334 aa)    
Predicted Functional Partners:
LOC114660777
Neurotrophin-4-like.
    
 0.995
ntf3
Neurotrophin 3.
    
 0.986
ripk2
Receptor interacting serine/threonine kinase 2.
    
  0.963
LOC114657796
Receptor-interacting serine/threonine-protein kinase 2-like.
    
  0.963
sort1
Sortilin 1.
    
 0.955
LOC114660397
Sortilin-like.
    
 0.955
traf6
TNF receptor associated factor 6.
    
 0.952
bdnf
Brain derived neurotrophic factor.
    
 0.942
arhgdib
Rho GDP dissociation inhibitor beta.
    
 0.932
LOC114661171
Rho GDP-dissociation inhibitor 2-like.
    
 0.932
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.