STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc39a6Solute carrier family 39 member 6. (783 aa)    
Predicted Functional Partners:
slc30a4
Solute carrier family 30 member 4.
   
 0.512
sod2
Superoxide dismutase 2.
  
  
 0.489
slc1a1
Solute carrier family 1 member 1.
  
 
 0.478
slc30a6
Solute carrier family 30 member 6.
  
 0.473
sdr39u1
Short chain dehydrogenase/reductase family 39U member 1.
  
    0.463
slc30a5
Solute carrier family 30 member 5.
  
 0.425
slc39a1
Solute carrier family 39 member 1.
   
 0.421
LOC114642544
Zinc transporter ZIP1-like.
   
 0.421
slc30a7
Solute carrier family 30 member 7.
  
 0.416
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.