STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snd1Staphylococcal nuclease and tudor domain containing 1. (926 aa)    
Predicted Functional Partners:
dicer1
Dicer 1, ribonuclease III.
  
 
 0.972
serbp1
SERPINE1 mRNA binding protein 1.
   
 0.965
LOC114664605
Protein argonaute-4.
    
 0.964
xpo5
Exportin 5.
     
 0.951
tarbp2
TARBP2 subunit of RISC loading complex.
     
 0.950
dhx9
DExH-box helicase 9.
   
 0.946
dcp2
Decapping mRNA 2.
    
  0.931
LOC114664606
Protein argonaute-1.
    
 0.858
ago2
Argonaute RISC catalytic component 2.
    
 0.858
LOC114665166
Protein argonaute-3.
    
 0.858
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.