STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abca2ATP binding cassette subfamily A member 2. (2492 aa)    
Predicted Functional Partners:
LOC114667284
Apolipoprotein A-IV-like.
   
 0.853
LOC114660679
Oxysterols receptor LXR-beta-like.
    
 0.755
nr1h3
Nuclear receptor subfamily 1 group H member 3.
    
 0.755
abca3
ATP binding cassette subfamily A member 3.
    
0.733
ENSECRP00000001097
annotation not available
     
 0.659
LOC114656901
Apolipoprotein A-I-like.
     
 0.659
LOC114647154
Cytochrome c oxidase assembly protein COX15 homolog.
    
 0.653
igbp1
Immunoglobulin binding protein 1.
    
 0.648
LOC114662354
Uncharacterized LOC114662354.
    
 0.630
abcd4
ATP binding cassette subfamily D member 4.
    
 0.623
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.