STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
upf3bUPF3B regulator of nonsense mediated mRNA decay. (454 aa)    
Predicted Functional Partners:
upf2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.997
upf1
UPF1 RNA helicase and ATPase.
    
 0.997
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.997
rbm8a
RNA binding motif protein 8A.
    
 0.996
casc3
CASC3 exon junction complex subunit.
    
 0.996
magoh
Mago homolog, exon junction complex subunit.
    
 0.992
smg5
SMG5 nonsense mediated mRNA decay factor.
   
 0.985
smg6
SMG6 nonsense mediated mRNA decay factor.
   
 0.985
rnps1
STIP1 homology and U-box containing protein 1.
    
 0.982
srrm1
Serine and arginine repetitive matrix 1.
    
 0.980
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.