STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubr2Ubiquitin protein ligase E3 component n-recognin 2. (1705 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.995
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
  0.933
LOC114662601
Polyubiquitin-like.
   
 0.863
ube2b
Ubiquitin conjugating enzyme E2 B.
    
 0.860
ube2a
Ubiquitin conjugating enzyme E2 A.
    
 0.860
ENSECRP00000030493
annotation not available
    
 0.860
ube2u
Ubiquitin conjugating enzyme E2 U.
    
 0.818
rps27a
Ribosomal protein S27a.
   
 0.815
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
     
 0.774
cdc73
Cell division cycle 73.
   
 
  0.738
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.