STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114661617Uncharacterized LOC114661617. (1096 aa)    
Predicted Functional Partners:
ptk7
Protein tyrosine kinase 7 (inactive).
    
  0.502
ENSECRP00000011435
annotation not available
    
  0.471
egflam
EGF like, fibronectin type III and laminin G domains.
    
  0.451
hgfac
HGF activator.
    
  0.444
ENSECRP00000004409
annotation not available
    
  0.444
habp2
Hyaluronan binding protein 2.
    
  0.444
mre11
MRE11 homolog, double strand break repair nuclease.
    
  0.439
rad50
RAD50 double strand break repair protein.
    
  0.407
cd5
CD5 molecule.
    
 
 0.402
cd79a
CD79a molecule.
    
 0.401
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.