STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt6Synaptotagmin 6. (590 aa)    
Predicted Functional Partners:
ston2
Stonin 2.
    
 0.776
itsn2
Intersectin 2.
     
 0.713
ENSECRP00000027989
annotation not available
     
 0.643
rims2
Regulating synaptic membrane exocytosis 2.
     
0.643
itsn1
Intersectin 1.
     
 0.580
snap47
Synaptosome associated protein 47.
    
 0.512
rab3c
RAB3C, member RAS oncogene family.
   
 0.511
rab3b
RAB3B, member RAS oncogene family.
   
 0.511
rab3a
RAB3A, member RAS oncogene family.
   
 0.511
rab3d
RAB3D, member RAS oncogene family.
   
 0.511
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.