STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dbf4DBF4 zinc finger. (739 aa)    
Predicted Functional Partners:
cdc7
Cell division cycle 7.
   
 0.982
mcm4
Minichromosome maintenance complex component 4.
   
 0.979
ENSECRP00000011061
annotation not available
   
 0.976
orc6
Origin recognition complex subunit 6.
   
 0.973
orc4
Origin recognition complex subunit 4.
    
 0.973
mcm7
Minichromosome maintenance complex component 7.
   
 0.972
ENSECRP00000015656
annotation not available
   
 0.971
mcm2
Minichromosome maintenance complex component 2.
   
 0.963
mcm6
Minichromosome maintenance complex component 6.
   
 0.953
LOC114648274
Zygotic DNA replication licensing factor mcm3-like.
   
 0.918
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.