STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shpkSedoheptulokinase. (470 aa)    
Predicted Functional Partners:
gpd2
Glycerol-3-phosphate dehydrogenase 2.
  
 0.944
psmd6
Proteasome 26S subunit, non-ATPase 6.
   
 0.897
psmd12
Proteasome 26S subunit, non-ATPase 12.
   
 0.891
psmd3
Proteasome 26S subunit, non-ATPase 3.
   
 0.890
psmd2
Proteasome 26S subunit, non-ATPase 2.
   
 0.888
psmd13
Proteasome 26S subunit, non-ATPase 13.
   
 0.886
ENSECRP00000009890
annotation not available
   
 0.878
adrm1
Adhesion regulating molecule 1.
   
 0.868
psmd1
Proteasome 26S subunit, non-ATPase 1.
   
 0.867
psmb4
Proteasome 20S subunit beta 4.
   
 0.855
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.