STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000021908annotation not available (226 aa)    
Predicted Functional Partners:
LOC114656137
Collagen alpha-1(XVIII) chain-like.
 
      0.900
ENSECRP00000006233
annotation not available
 
      0.899
ENSECRP00000011186
annotation not available
 
  
  0.614
ENSECRP00000007587
annotation not available
 
  
  0.608
col8a1
Collagen type VIII alpha 1 chain.
 
  
  0.534
ENSECRP00000004418
annotation not available
    
 0.489
ENSECRP00000004485
annotation not available
    
 0.489
LOC114659397
Matrix metalloproteinase-9-like.
    
 0.489
LOC114644336
Uncharacterized LOC114644336.
    
 0.489
ENSECRP00000025158
annotation not available
    
 0.485
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.