STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem161aTransmembrane protein 161A. (490 aa)    
Predicted Functional Partners:
tmem38a
Transmembrane protein 38A.
      
 0.562
popdc3
Popeye domain containing 3.
      
 0.556
tmem94
Transmembrane protein 94.
      
 0.543
ENSECRP00000021309
annotation not available
      
 0.489
LOC114664773
Kelch-like protein 31.
      
 0.452
klhl31
Kelch like family member 31.
      
 0.452
ENSECRP00000002659
annotation not available
      
 0.442
slc25a42
Solute carrier family 25 member 42.
   
  
 0.434
tmem214
Transmembrane protein 214.
      
 0.428
pold1
DNA polymerase delta 1, catalytic subunit.
      
 0.428
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.