STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox21SRY-box transcription factor 21. (247 aa)    
Predicted Functional Partners:
ENSECRP00000002222
annotation not available
    
 0.737
LOC114658153
POU domain, class 5, transcription factor 1-like.
    
 0.737
ctnnb1
Catenin beta 1.
    
 0.647
jup
Junction plakoglobin.
    
 0.647
ube2i
Ubiquitin conjugating enzyme E2 I.
    
   0.626
LOC114661956
SUMO-conjugating enzyme UBC9-like.
    
   0.576
tcf7l1
Transcription factor 7 like 1.
    
 0.559
tcf7l2
Transcription factor 7 like 2.
    
0.559
tcf7
Transcription factor 7.
    
0.559
lef1
Lymphoid enhancer binding factor 1.
    
0.559
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.