STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmed8Transmembrane p24 trafficking protein family member 8. (290 aa)    
Predicted Functional Partners:
aldh18a1
Aldehyde dehydrogenase 18 family member A1.
  
 
 0.890
l3hypdh
trans-L-3-hydroxyproline dehydratase.
    
 0.801
aldh4a1
Aldehyde dehydrogenase 4 family member A1.
  
 0.798
crym
Crystallin mu.
  
 
 0.795
aldh5a1
Aldehyde dehydrogenase 5 family member A1.
    
 0.765
LOC114668307
Proline dehydrogenase 1, mitochondrial-like.
   
 0.747
prodh2
Proline dehydrogenase 2.
   
 0.747
ccdc47
Coiled-coil domain containing 47.
    
  0.732
got2
Glutamic-oxaloacetic transaminase 2.
    
 0.721
mgll
Monoglyceride lipase.
    
 0.714
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.