STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114663573Uncharacterized LOC114663573. (3949 aa)    
Predicted Functional Partners:
btf3
Basic transcription factor 3.
   
 0.998
LOC114659163
Transcription factor BTF3 homolog 4.
   
 0.994
eef1g
Eukaryotic translation elongation factor 1 gamma.
   
 
 0.979
LOC114654460
60S ribosomal protein L17.
  
 
 0.975
rpl23a
Ribosomal protein L23a.
   
 
 0.970
rpl4
Ribosomal protein L4.
   
 
 0.970
LOC114660507
60S ribosomal protein L10.
  
   0.969
rpl3
Ribosomal protein L3.
   
 
 0.967
rpl7a
Ribosomal protein L7a.
   
   0.967
rpl18a
Ribosomal protein L18a.
   
 
 0.966
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.