STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sh3bgrlSH3 domain binding glutamate rich protein like. (114 aa)    
Predicted Functional Partners:
rab7b
RAB7B, member RAS oncogene family.
   
    0.717
LOC114656084
Protein adenylyltransferase SelO-1, mitochondrial-like.
   
    0.566
selenoo
Selenoprotein O.
   
    0.566
apool
Apolipoprotein O like.
      
 0.519
blmh
Bleomycin hydrolase.
      
 0.463
tmem150a
Transmembrane protein 150A.
      
 0.414
LOC114646831
Transmembrane protein 150A-like.
      
 0.414
ENSECRP00000022411
annotation not available
      
 0.412
u2af2
U2 small nuclear RNA auxiliary factor 2.
      
 0.412
cnot4
CCR4-NOT transcription complex subunit 4.
      
 0.410
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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