STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brf1BRF1 RNA polymerase III transcription initiation factor subunit. (651 aa)    
Predicted Functional Partners:
gtf3c3
General transcription factor IIIC subunit 3.
    
 0.999
polr3f
RNA polymerase III subunit F.
    
 0.992
tbp
TATA-box binding protein.
   
 0.989
polr3b
RNA polymerase III subunit B.
   
 0.989
LOC114666721
TATA-box-binding protein-like.
   
 0.989
ENSECRP00000021625
annotation not available
    
 0.987
bdp1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 0.987
polr2k
RNA polymerase II subunit K.
    
 0.978
polr3c
RNA polymerase III subunit C.
    
 0.972
crcp
CGRP receptor component.
    
 0.972
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.