STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c9h9orf116Chromosome 9 C9orf116 homolog. (131 aa)    
Predicted Functional Partners:
c13h5orf49
Chromosome 13 C5orf49 homolog.
    
 
 0.877
nrde2
NRDE-2, necessary for RNA interference, domain containing.
    
 0.854
tekt3
Tektin 3.
   
   0.849
cfap126
Cilia and flagella associated protein 126.
   
   0.840
efhc2
EF-hand domain containing 2.
    
 
 0.833
c3h1orf194
Chromosome 3 C1orf194 homolog.
   
   0.833
tekt2
Tektin 2.
   
   0.832
cfap53
Cilia and flagella associated protein 53.
    
 
 0.827
LOC114658213
Cilia- and flagella-associated protein 45-like.
   
   0.827
efhc1
EF-hand domain containing 1.
    
 
 0.825
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.