STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mia3MIA SH3 domain ER export factor 3. (2194 aa)    
Predicted Functional Partners:
preb
Prolactin regulatory element binding.
    
 0.847
arid4a
AT-rich interaction domain 4A.
    
 0.714
arid4b
AT-rich interaction domain 4B.
    
 0.714
ENSECRP00000011256
annotation not available
   
  0.699
LOC114665544
Protein transport protein Sec23A.
    
 0.671
sec23a
Sec23 homolog A, coat complex II component.
    
 0.671
fam20c
FAM20C golgi associated secretory pathway kinase.
    
  0.668
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.664
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.663
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.620
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.