STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhm3Pleckstrin homology domain containing M3. (710 aa)    
Predicted Functional Partners:
wdfy4
WDFY family member 4.
   
 
  0.843
uvrag
UV radiation resistance associated.
    
 0.828
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.515
def8
Differentially expressed in FDCP 8 homolog.
    
 
0.495
LOC114647098
Ras-related protein Rab-4B.
    
  0.484
becn1
Beclin 1.
    
 
 0.481
c1qbp
Complement C1q binding protein.
   
  
 0.469
itsn1
Intersectin 1.
    
   0.455
itsn2
Intersectin 2.
    
   0.455
ccnyl1
Cyclin Y like 1.
      
 0.445
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.