STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ghitmGrowth hormone inducible transmembrane protein. (347 aa)    
Predicted Functional Partners:
LOC114661058
Cytochrome b-c1 complex subunit 2, mitochondrial.
   
 
 0.729
bsdc1
BSD domain containing 1.
   
    0.717
tmbim6
Transmembrane BAX inhibitor motif containing 6.
   
  
0.672
vamp7
Vesicle associated membrane protein 7.
      
 0.562
cbarp
CACN subunit beta associated regulatory protein.
      
 0.557
mre11
MRE11 homolog, double strand break repair nuclease.
      
 0.555
clrn3
Clarin 3.
      
 0.555
rpsa
Ribosomal protein SA.
      
 0.526
itm2c
Integral membrane protein 2C.
      
 0.524
cdhr1
Cadherin related family member 1.
 
    
 0.517
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.