STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pex19Peroxisomal biogenesis factor 19. (285 aa)    
Predicted Functional Partners:
pex3
Peroxisomal biogenesis factor 3.
    
 0.999
pex14
Peroxisomal biogenesis factor 14.
    
 0.998
pex10
Peroxisomal biogenesis factor 10.
    
 0.993
ENSECRP00000027170
annotation not available
    
 0.987
pex13
Peroxisomal biogenesis factor 13.
    
 0.987
pex12
Peroxisomal biogenesis factor 12.
    
 0.984
fam185a
Family with sequence similarity 185 member A.
    
 0.983
pex2
Peroxisomal biogenesis factor 2.
   
 0.977
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 0.975
LOC114667738
Peroxisomal membrane protein 11A-like.
   
 0.975
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.