STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ess2Ess-2 splicing factor homolog. (476 aa)    
Predicted Functional Partners:
prpf19
pre-mRNA processing factor 19.
    
 0.920
xab2
XPA binding protein 2.
   
 0.901
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
  0.885
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
  0.875
crnkl1
Crooked neck pre-mRNA splicing factor 1.
     
 0.860
snw1
SNW domain containing 1.
    
 0.855
ccdc130
Coiled-coil domain containing 130.
    
 0.853
syf2
SYF2 pre-mRNA splicing factor.
    
  0.845
isy1
ISY1 splicing factor homolog.
    
 0.840
bud31
BUD31 homolog.
     
 0.839
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.