scrt1 protein (Erpetoichthys calabaricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scrt1

Scratch family transcriptional repressor 1. (279 aa)

Predicted Functional Partners:

kpnb1

0.567

gsk3b

0.440

ENSECRP00000032928

0.440

ctbp2

0.429

LOC114660471

0.429

ctbp1

0.429

LOC114652322

0.428

rcor3

0.428

rcor1

0.428

prrg4

0.420

Your Current Organism:

Erpetoichthys calabaricus

NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSECRP00000032928	scrt1	ENSECRP00000032928	ENSECRP00000023236	annotation not available	Scratch family transcriptional repressor 1.	0.440
LOC114652322	LOC114660471	ENSECRP00000004451	ENSECRP00000023366	REST corepressor 2-like.	C-terminal-binding protein 1-like.	0.513
LOC114652322	ctbp1	ENSECRP00000004451	ENSECRP00000027345	REST corepressor 2-like.	C-terminal binding protein 1.	0.513
LOC114652322	ctbp2	ENSECRP00000004451	ENSECRP00000014068	REST corepressor 2-like.	C-terminal binding protein 2.	0.513
LOC114652322	scrt1	ENSECRP00000004451	ENSECRP00000023236	REST corepressor 2-like.	Scratch family transcriptional repressor 1.	0.428
LOC114660471	LOC114652322	ENSECRP00000023366	ENSECRP00000004451	C-terminal-binding protein 1-like.	REST corepressor 2-like.	0.513
LOC114660471	ctbp1	ENSECRP00000023366	ENSECRP00000027345	C-terminal-binding protein 1-like.	C-terminal binding protein 1.	0.835
LOC114660471	ctbp2	ENSECRP00000023366	ENSECRP00000014068	C-terminal-binding protein 1-like.	C-terminal binding protein 2.	0.839
LOC114660471	rcor1	ENSECRP00000023366	ENSECRP00000027720	C-terminal-binding protein 1-like.	REST corepressor 1.	0.524
LOC114660471	rcor3	ENSECRP00000023366	ENSECRP00000023821	C-terminal-binding protein 1-like.	REST corepressor 3.	0.513
LOC114660471	scrt1	ENSECRP00000023366	ENSECRP00000023236	C-terminal-binding protein 1-like.	Scratch family transcriptional repressor 1.	0.429
ctbp1	LOC114652322	ENSECRP00000027345	ENSECRP00000004451	C-terminal binding protein 1.	REST corepressor 2-like.	0.513
ctbp1	LOC114660471	ENSECRP00000027345	ENSECRP00000023366	C-terminal binding protein 1.	C-terminal-binding protein 1-like.	0.835
ctbp1	ctbp2	ENSECRP00000027345	ENSECRP00000014068	C-terminal binding protein 1.	C-terminal binding protein 2.	0.835
ctbp1	rcor1	ENSECRP00000027345	ENSECRP00000027720	C-terminal binding protein 1.	REST corepressor 1.	0.520
ctbp1	rcor3	ENSECRP00000027345	ENSECRP00000023821	C-terminal binding protein 1.	REST corepressor 3.	0.513
ctbp1	scrt1	ENSECRP00000027345	ENSECRP00000023236	C-terminal binding protein 1.	Scratch family transcriptional repressor 1.	0.429
ctbp2	LOC114652322	ENSECRP00000014068	ENSECRP00000004451	C-terminal binding protein 2.	REST corepressor 2-like.	0.513
ctbp2	LOC114660471	ENSECRP00000014068	ENSECRP00000023366	C-terminal binding protein 2.	C-terminal-binding protein 1-like.	0.839
ctbp2	ctbp1	ENSECRP00000014068	ENSECRP00000027345	C-terminal binding protein 2.	C-terminal binding protein 1.	0.835