STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stmn1Stathmin 1. (162 aa)    
Predicted Functional Partners:
mapk1
Mitogen-activated protein kinase 1.
    
 0.840
LOC114661713
Mitogen-activated protein kinase 1-like.
    
 0.840
mapk7
Mitogen-activated protein kinase 7.
    
 0.742
mapk11
Mitogen-activated protein kinase 11.
    
  0.648
LOC114656052
Mitogen-activated protein kinase 12-like.
    
  0.648
mapk13
Mitogen-activated protein kinase 13.
    
  0.648
mapk14
Mitogen-activated protein kinase 14.
    
  0.648
LOC114669065
Mitogen-activated protein kinase 12-like.
    
  0.648
mapk15
Mitogen-activated protein kinase 15.
    
  0.631
mars1
methionyl-tRNA synthetase 1.
   
 0.624
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.