STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000023255annotation not available (234 aa)    
Predicted Functional Partners:
lrit3
Leucine rich repeat, Ig-like and transmembrane domains 3.
    
 0.740
lrit1
Leucine rich repeat, Ig-like and transmembrane domains 1.
    
 0.729
slit1
Slit guidance ligand 1.
   
 0.708
slit2
Slit guidance ligand 2.
   
 0.708
ENSECRP00000007493
annotation not available
   
 0.708
ENSECRP00000009316
annotation not available
   
 0.708
ENSECRP00000010266
annotation not available
   
 0.708
lrrc70
Leucine rich repeat containing 70.
   
 0.708
ENSECRP00000014680
annotation not available
   
 0.708
slit3
Slit guidance ligand 3.
   
 0.708
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.