STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bmerb1bMERB domain containing 1. (208 aa)    
Predicted Functional Partners:
fopnl
FGFR1OP N-terminal like.
      
 0.561
dctn4
Dynactin subunit 4.
    
   0.557
dctn1
Dynactin subunit 1.
    
   0.554
marf1
Meiosis regulator and mRNA stability factor 1.
      
 0.491
dctn6
Dynactin subunit 6.
    
   0.457
actr10
Actin related protein 10.
    
   0.420
actr1b
Actin related protein 1B.
    
   0.406
actr1a
Actin related protein 1A.
    
   0.406
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.