STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
seh1lSEH1 like nucleoporin. (366 aa)    
Predicted Functional Partners:
nup43
Nucleoporin 43.
   
 0.999
nup107
Nucleoporin 107.
   
 0.999
nup133
Nucleoporin 133.
   
 0.999
nup98
Nucleoporin 98.
   
 0.999
wdr59
WD repeat domain 59.
    
 0.999
mios
Meiosis regulator for oocyte development.
    
 0.999
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
    
 0.999
nup85
Nucleoporin 85.
   
 0.999
wdr24
WD repeat domain 24.
    
 0.999
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
0.999
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.