STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114658703Interferon-induced protein 44-like. (436 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
   0.763
ENSECRP00000003092
annotation not available
   
   0.618
mrpl43
Mitochondrial ribosomal protein L43.
   
   0.615
mrpl22
Mitochondrial ribosomal protein L22.
   
 
 0.615
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.615
mrpl27
Mitochondrial ribosomal protein L27.
   
 
 0.612
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.609
LOC114645697
39S ribosomal protein L23, mitochondrial-like.
   
 
 0.604
mrps6
Mitochondrial ribosomal protein S6.
   
   0.604
mrpl3
Mitochondrial ribosomal protein L3.
    
 
 0.601
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.