STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxdc1Pyridoxal dependent decarboxylase domain containing 1. (790 aa)    
Predicted Functional Partners:
hsbp1
Heat shock factor binding protein 1.
      
 0.566
ppp1r35
Protein phosphatase 1 regulatory subunit 35.
      
 0.561
bahd1
Bromo adjacent homology domain containing 1.
      
 0.556
bfar
Bifunctional apoptosis regulator.
      
 0.555
ntan1
N-terminal asparagine amidase.
      
 0.554
LOC114661656
PAXIP1-associated glutamate-rich protein 1-like.
      
 0.554
ccdc6
Coiled-coil domain containing 6.
      
 0.510
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
      
 0.508
tatdn2
TatD DNase domain containing 2.
      
 0.467
carhsp1
Calcium regulated heat stable protein 1.
      
 0.448
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.