STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgmaRepulsive guidance molecule BMP co-receptor a. (453 aa)    
Predicted Functional Partners:
ENSECRP00000006208
annotation not available
   
 0.882
neo1
Neogenin 1.
   
 0.882
acvr1
Activin A receptor type 1.
    
 0.878
bmpr1b
Bone morphogenetic protein receptor type 1B.
   
 0.876
bmpr1a
Bone morphogenetic protein receptor type 1A.
   
 0.876
LOC114662729
RGM domain family member B-like.
  
  
 
0.847
rgmb
Repulsive guidance molecule BMP co-receptor b.
  
  
 
0.846
igdcc4
Immunoglobulin superfamily DCC subclass member 4.
   
 0.844
LOC114645296
Immunoglobulin superfamily DCC subclass member 3-like.
    
 0.739
igdcc3
Immunoglobulin superfamily DCC subclass member 3.
    
 0.739
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.