STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrn3RRN3 homolog, RNA polymerase I transcription factor. (618 aa)    
Predicted Functional Partners:
twistnb
TWIST neighbor.
   
 0.998
polr1b
RNA polymerase I subunit B.
   
 0.998
polr1a
RNA polymerase I subunit A.
   
 0.998
polr1c
RNA polymerase I and III subunit C.
   
 0.996
polr1e
RNA polymerase I subunit E.
   
 0.995
znrd1
Zinc ribbon domain containing 1.
   
 0.994
cd3eap
CD3e molecule associated protein.
   
 0.991
polr2e
RNA polymerase II subunit E.
    
 0.990
polr2k
RNA polymerase II subunit K.
   
 0.988
polr2f
RNA polymerase II subunit F.
   
 0.988
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.