STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a21Solute carrier family 25 member 21. (269 aa)    
Predicted Functional Partners:
tbx20
T-box transcription factor 20.
    
   0.752
mipol1
Mirror-image polydactyly 1.
   
  
 0.600
neurl1
Neuralized E3 ubiquitin protein ligase 1.
      
 0.553
neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.553
ctu1
Cytosolic thiouridylase subunit 1.
 
      0.508
dnase1
Deoxyribonuclease 1.
    
   0.448
dnase1l3
Deoxyribonuclease 1 like 3.
    
   0.448
LOC114661319
Deoxyribonuclease gamma-like.
    
   0.448
LOC114668854
Deoxyribonuclease-1-like.
    
   0.448
unc79
Unc-79 homolog, NALCN channel complex subunit.
      
 0.428
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.