STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chd2Chromodomain helicase DNA binding protein 2. (1764 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.947
ruvbl1
RuvB like AAA ATPase 1.
    
 0.809
ruvbl2
RuvB like AAA ATPase 2.
   
 0.803
ssrp1
Structure specific recognition protein 1.
    
 0.799
arid4a
AT-rich interaction domain 4A.
   
 0.795
arid4b
AT-rich interaction domain 4B.
   
 0.795
ino80c
INO80 complex subunit C.
    
 0.784
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
  0.783
polr2c
RNA polymerase II subunit C.
   
 0.772
fancm
FA complementation group M.
   
 0.762
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.