STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl34Mitochondrial ribosomal protein L34. (120 aa)    
Predicted Functional Partners:
mrpl43
Mitochondrial ribosomal protein L43.
   
 
 0.995
mrpl13
Mitochondrial ribosomal protein L13.
   
 
 0.995
ENSECRP00000003092
annotation not available
   
 
 0.993
mrps15
Mitochondrial ribosomal protein S15.
   
 
 0.993
mrpl16
Mitochondrial ribosomal protein L16.
   
 0.993
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.992
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.992
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.992
mrpl30
Mitochondrial ribosomal protein L30.
   
 
 0.991
LOC114645697
39S ribosomal protein L23, mitochondrial-like.
   
 
 0.990
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.