STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srp54Signal recognition particle 54. (504 aa)    
Predicted Functional Partners:
srp9
Signal recognition particle 9.
   
 0.999
srp14
Signal recognition particle 14.
    
 0.999
srp19
Signal recognition particle 19.
   
 0.999
srp68
Signal recognition particle 68.
    
 0.999
srpra
SRP receptor subunit alpha.
  
0.999
srp72
Signal recognition particle 72.
   
 0.999
rpl23a
Ribosomal protein L23a.
  
 0.995
rpl35
Ribosomal protein L35.
  
 
 0.993
rpl23
Ribosomal protein L23.
  
 
 0.992
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.990
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.