STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abhd8Abhydrolase domain containing 8. (490 aa)    
Predicted Functional Partners:
acsf2
acyl-CoA synthetase family member 2.
   
 0.886
tat
Tyrosine aminotransferase.
    
 0.822
got2
Glutamic-oxaloacetic transaminase 2.
   
  0.816
atp5po
ATP synthase peripheral stalk subunit OSCP.
   
 0.751
hsdl2
Hydroxysteroid dehydrogenase like 2.
  
 0.736
atp5f1b
ATP synthase F1 subunit beta.
   
 0.708
cdca8
Cell division cycle associated 8.
   
 0.708
atp5f1a
ATP synthase F1 subunit alpha.
   
 0.706
atp5f1c
ATP synthase F1 subunit gamma.
   
 0.698
acox1
acyl-CoA oxidase 1.
  
 0.697
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.