STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114662701Ceramide synthase 2-like. (398 aa)    
Predicted Functional Partners:
acer3
Alkaline ceramidase 3.
    
 0.909
sgpp2
Sphingosine-1-phosphate phosphatase 2.
    
 0.893
sgpp1
Sphingosine-1-phosphate phosphatase 1.
    
 0.893
acer2
Alkaline ceramidase 2.
    
 0.891
acer1
Alkaline ceramidase 1.
    
 0.891
smpd2
Sphingomyelin phosphodiesterase 2.
     
 0.880
degs1
Delta 4-desaturase, sphingolipid 1.
   
 0.880
degs2
Delta 4-desaturase, sphingolipid 2.
   
 0.880
LOC114645583
Neutral ceramidase-like.
     
 0.879
ugcg
UDP-glucose ceramide glucosyltransferase.
     
 0.879
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.